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Seokhyun Moon

Ph.D. Candidate in KAIST Chemistry

mshmjp@kaist.ac.kr, mshmjp02@gmail.com

Scholar | Linkedin | Github | CV

About Me

My research focuses on the development of advanced computational frameworks for understanding and predicting molecular interactions. Starting from PIGNet, a Physics-informed graph neural network for binding affinity estimation, I am currently working on unifying accurate estimation of energetically favorable states and their binding affinities, by integrating physics and energy-based models. I'm also interested in improving hit compounds by editing their building blocks with generative AI.

Publications

Discrete Diffusion Schördinger Bridge Matching for Graph Transformation

Jun Hyeong Kim*, Seonghwan Kim*, Seokhyun Moon*, Hyeongwoo Kim*, Jeheon Woo*, and Woo Youn Kim

Arxiv Preprint, 2024

Paper

DeepBioisostere: Discovering Bioisosteres with Deep Learning for a Fine Control of Multiple Molecular Properties

Hyeongwoo Kim*, Seokhyun Moon*, Wonho Zhung, and Woo Youn Kim

Arxiv Preprint, 2024

Paper | Code

Toward Generalizable Structure-Based Deep Learning Models for Protein-Ligand Interaction Prediction: Challenges and Strategies

Seokhyun Moon*, Wonho Zhung*, and Woo Youn Kim

WIREs Computational Molecular Science, 2024

Paper

PIGNet2: A Versatile Deep Learning-based Protein-Ligand Interaction Prediction Model for Binding Affinity Scoring and Virtual Screening

Seokhyun Moon*, Sang-Yeon Hwang, Jaechang Lim, and Woo Youn Kim

Digital Discovery, 2024

Paper | Code

GeoTMI: Predicting Quantum Chemical Property with Easy-to-Obtain Geometry via Positional Denoising

Hyeonsu Kim*, Jeheon Woo*, Seonghwan Kim*, Seokhyun Moon*, Jun Hyeong Kim*, and Woo Youn Kim

NeurIPS, 2023

Paper | Code

PIGNet: a physics-informed deep learning model toward generalized drug-target interaction prediction

Seokhyun Moon*, Wonho Zhung*, Soojung Yang*, Jaechang Lim, and Woo Youn Kim

Chemical Science, 2022

Paper | Code

Scaffold-based molecular design with a graph generative model

Jaechang Lim*, Sang-Yeon Hwang*, Seokhyun Moon, Seungsu Kim, and Woo Youn Kim

Chemical Science, 2020

Paper | Code

Awards

Recipient, 10th EDISON Computational Chemistry software application competition

Recipient, KAIST Undergraduate Research Program participaiton prize

Recipient, Qualcomm-KAIST Innovation Awards 2019